Average turn angles (kinked-ness and handed-ness) along the main chain Available per analysis group for all polypeptide or polynucleotide molecules with at least two complete residues (see TURNS_RES.dat).Angular correlation function Available per analysis group for all polypeptide or polynucleotide molecules with at least two complete residues (see PERSISTENCE.dat).Improper torsional angle distributions Available per improper dihedral (central carbon with three atoms directly bonded to it) (see INTHISTS_IM.dat).Dihedral angle distributions Available per dihedral angle (along four atoms bonded in direct sequence) (see INTHISTS_DI.dat).Bond angle distributions Available per bond angle (across three atoms bonded in direct sequence) (see INTHISTS_BA.dat).Bond length distributions Available per bond (two atoms directly bonded) length (see INTHISTS_BL.dat).Instantaneous (running output) of system-averaged polymeric properties Available system-wide (see POLYMER.dat).Distribution of void spaces Available system-wide for single polymer simulations (see HOLES.dat).2D-Histogram of radius of gyration and instantaneous asphericity δ Available per analysis group for all non-rigid molecules (see RDHIST.dat).Histogram of end-to-end distances Available per analysis group for all non-rigid molecules (see RETEHIST.dat).Radius of gyration histogram Available per analysis group for all non-rigid molecules (see RGHIST.dat).Simulated averaged fiber diffraction data (preliminary version) Available system-wide (see DIFFRACTION.dat).Average Kratky profile Available per analysis group for all non-rigid molecules (see KRATKY.dat).Average radial density profile Available per analysis group for all non-rigid molecules (see DENSPROF.dat).Average internal scaling behavior Available per analysis group for all non-rigid molecules (see INTSCAL.dat).Average radius of gyration (and t), asphericity and acylindricity, end-to-end distance, hydrodynamic radius, ordered Eigenvalues of gyration tensor Available per analysis group for all non-rigid molecules (see POLYAVG.dat, end-to-end distance also requires at least two residues in molecule).

Please also note the general and other comments below. Overview of Analysis Features and Output Files in CAMPARI

Vmd measure distance